hpd protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hpd

4-hydroxyphenylpyruvate dioxygenase. (401 aa)

Predicted Functional Partners:

hmgA

0.995

pat

0.919

hisC

0.910

AMY55174.1

0.907

AMY53592.1

0.888

gatA_1

0.815

aam_1

0.815

gatA_2

0.815

nylA

0.815

aam_2

0.815

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY53592.1	hmgA	A3L23_02250	A3L23_02252	Hypothetical protein.	Homogentisate 1,2-dioxygenase.	0.994
AMY53592.1	hpd	A3L23_02250	A3L23_02248	Hypothetical protein.	4-hydroxyphenylpyruvate dioxygenase.	0.888
AMY55174.1	hisC	A3L23_03861	A3L23_04008	Putative aminotransferase.	Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.925
AMY55174.1	hpd	A3L23_03861	A3L23_02248	Putative aminotransferase.	4-hydroxyphenylpyruvate dioxygenase.	0.907
AMY55174.1	pat	A3L23_03861	A3L23_02097	Putative aminotransferase.	Putative phenylalanine aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.906
aam_1	hpd	A3L23_00972	A3L23_02248	Acylamidase; Belongs to the amidase family.	4-hydroxyphenylpyruvate dioxygenase.	0.815
aam_2	hpd	A3L23_03488	A3L23_02248	Acylamidase; Belongs to the amidase family.	4-hydroxyphenylpyruvate dioxygenase.	0.815
gatA_1	hpd	A3L23_00446	A3L23_02248	Glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.	4-hydroxyphenylpyruvate dioxygenase.	0.815
gatA_2	hpd	A3L23_00979	A3L23_02248	Glutamyl-tRNA(Gln) amidotransferase subunit A.	4-hydroxyphenylpyruvate dioxygenase.	0.815
hisC	AMY55174.1	A3L23_04008	A3L23_03861	Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Putative aminotransferase.	0.925
hisC	hpd	A3L23_04008	A3L23_02248	Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	4-hydroxyphenylpyruvate dioxygenase.	0.910
hisC	pat	A3L23_04008	A3L23_02097	Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Putative phenylalanine aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.917
hmgA	AMY53592.1	A3L23_02252	A3L23_02250	Homogentisate 1,2-dioxygenase.	Hypothetical protein.	0.994
hmgA	hpd	A3L23_02252	A3L23_02248	Homogentisate 1,2-dioxygenase.	4-hydroxyphenylpyruvate dioxygenase.	0.995
hpd	AMY53592.1	A3L23_02248	A3L23_02250	4-hydroxyphenylpyruvate dioxygenase.	Hypothetical protein.	0.888
hpd	AMY55174.1	A3L23_02248	A3L23_03861	4-hydroxyphenylpyruvate dioxygenase.	Putative aminotransferase.	0.907
hpd	aam_1	A3L23_02248	A3L23_00972	4-hydroxyphenylpyruvate dioxygenase.	Acylamidase; Belongs to the amidase family.	0.815
hpd	aam_2	A3L23_02248	A3L23_03488	4-hydroxyphenylpyruvate dioxygenase.	Acylamidase; Belongs to the amidase family.	0.815
hpd	gatA_1	A3L23_02248	A3L23_00446	4-hydroxyphenylpyruvate dioxygenase.	Glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.	0.815
hpd	gatA_2	A3L23_02248	A3L23_00979	4-hydroxyphenylpyruvate dioxygenase.	Glutamyl-tRNA(Gln) amidotransferase subunit A.	0.815