Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ygiD4,5-DOPA dioxygenase extradiol. (309 aa)    
Predicted Functional Partners:
AMY52918.1
Putative quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.567
AMY53597.1
Hypothetical protein.
       0.564
garL
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.539
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.464
AMY53599.1
Putative inactive lipase.
       0.448
AMY53038.1
Putative quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.410
AMY53041.1
Putative quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.405
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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