Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uctC_1Acetyl-CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. (369 aa)    
Predicted Functional Partners:
acdA_2
Acyl-CoA dehydrogenase.
 
 0.703
fadR_3
Fatty acid metabolism regulator protein.
  
    0.670
yngG
Hydroxymethylglutaryl-CoA lyase YngG; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
 
  0.453
AMY53599.1
Putative inactive lipase.
  
    0.445
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.437
ilvB1
Acetolactate synthase large subunit IlvB1.
  
 
 0.419
poxB
Pyruvate dehydrogenase; Belongs to the TPP enzyme family.
  
 
 0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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