Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yceI_2Protein YceI; Belongs to the UPF0312 family. (240 aa)    
Predicted Functional Partners:
polX
DNA polymerase/3'-5' exonuclease PolX.
       0.567
nlhH_2
Carboxylesterase NlhH.
       0.558
AMY53618.1
Hypothetical protein.
       0.535
AMY55426.1
Hypothetical protein.
 
     0.525
AMY53282.1
Hypothetical protein.
 
     0.495
AMY51829.1
Hypothetical protein.
 
     0.481
AMY52125.1
Hypothetical protein.
  
     0.479
AMY54606.1
Hypothetical protein.
  
     0.468
AMY52961.1
Hypothetical protein.
  
     0.466
AMY52230.1
Universal stress protein.
  
     0.414
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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