Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cynR_2HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family. (315 aa)    
Predicted Functional Partners:
hcaR_3
Hca operon transcriptional activator HcaR; Belongs to the LysR transcriptional regulatory family.
  
     0.763
hcaR_5
Hca operon transcriptional activator HcaR; Belongs to the LysR transcriptional regulatory family.
  
     0.708
dapE_1
Succinyl-diaminopimelate desuccinylase.
 
 
 
 0.689
proP_3
Proline/betaine transporter.
  
    0.504
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 
 0.444
paaX
Transcriptional repressor PaaX.
  
    0.441
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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