Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53643.1Hypothetical protein. (247 aa)    
Predicted Functional Partners:
btuF_3
Vitamin B12-binding protein.
  
    0.573
AMY53642.1
Hypothetical protein.
 
  
 0.571
fhuC_3
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
  
  
 0.565
AMY53647.1
Putative multidrug-efflux transporter.
       0.553
hmuU_2
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.550
AMY55123.1
Hypothetical protein.
 
  
 0.536
AMY52070.1
Hypothetical protein.
  
  
 0.418
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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