Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53684.1Hypothetical protein. (86 aa)    
Predicted Functional Partners:
AMY53685.1
Hypothetical protein.
       0.708
AMY53683.1
Putative oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.643
aidB_2
Putative acyl-CoA dehydrogenase AidB.
  
 0.638
hsaD_2
4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase.
   
  0.607
paaZ_2
Bifunctional protein PaaZ.
   
 0.597
mmgC_1
Acyl-CoA dehydrogenase.
   
 0.590
acdA_1
Acyl-CoA dehydrogenase.
   
 0.590
acdA_2
Acyl-CoA dehydrogenase.
   
 0.590
acdA_3
Acyl-CoA dehydrogenase.
   
 0.590
bbsG_1
(R)-benzylsuccinyl-CoA dehydrogenase.
   
 0.590
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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