Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY53708.1Putative HTH-type transcriptional regulator. (201 aa)    
Predicted Functional Partners:
choD_2
Cholesterol oxidase.
 
    0.898
AMY53709.1
Baeyer-Villiger monooxygenase.
 
     0.897
AMY53711.1
Hypothetical protein.
 
     0.893
ywtF
Putative transcriptional regulator YwtF.
   
    0.580
katA
Catalase; Belongs to the catalase family.
       0.469
cobB_1
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.461
cobB_2
NAD-dependent protein deacylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.461
AMY53240.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
   0.460
AMY53308.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
   0.460
cdhR_2
HTH-type transcriptional regulator CdhR.
   
    0.421
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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