Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY53714.1Phosphorylated carbohydrates phosphatase. (229 aa)    
Predicted Functional Partners:
AMY53715.1
Trehalase.
       0.828
fgd1_3
F420-dependent glucose-6-phosphate dehydrogenase.
  
    0.757
fabG_11
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
    0.743
moaA2
Cyclic pyranopterin monophosphate synthase 2; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.580
ftpA
Fine tangled pili major subunit; Belongs to the Dps family.
       0.565
AMY56090.1
Hypothetical protein.
 
    0.448
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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