Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbpGPenicillin-binding protein 2D. (783 aa)    
Predicted Functional Partners:
pbpA_2
Penicillin-binding protein A.
 
 
 
 0.857
pbpA_1
Penicillin-binding protein A.
 
 
 
 0.824
mrdA
Penicillin-binding protein 2.
 
 
 
 0.819
AMY56003.1
Cell wall synthesis protein Wag31.
 
 
 
 0.799
AMY55272.1
Cell wall synthesis protein Wag31.
 
 
 
 0.772
ftsW
Putative lipid II flippase FtsW; Belongs to the SEDS family.
 
 
 
 0.771
whiB4
Transcriptional regulator WhiB4; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
     
 0.722
AMY53923.1
Hypothetical protein.
  
     0.714
AMY54438.1
Hypothetical protein.
 
 
 
 0.704
AMY52577.1
Hypothetical protein.
 
  
 0.683
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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