Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY53736.1Soluble epoxide hydrolase. (310 aa)    
Predicted Functional Partners:
AMY53737.1
Hypothetical protein.
 
     0.864
cpo_1
Non-heme chloroperoxidase.
  
   
 0.718
yhjE_4
Inner membrane metabolite transport protein YhjE.
       0.584
ephD_3
Putative oxidoreductase EphD.
  
     0.579
ephD_4
Putative oxidoreductase EphD.
  
  
 0.572
nhaA_1
Na(+)/H(+) antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
       0.528
pimA_4
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase.
  
    0.513
bpoC_2
Putative non-heme bromoperoxidase BpoC.
  
     0.473
acoC
Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system.
  
     0.467
yvaM_1
AB hydrolase superfamily protein YvaM.
  
     0.452
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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