Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53737.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
AMY53736.1
Soluble epoxide hydrolase.
 
     0.864
yhjE_4
Inner membrane metabolite transport protein YhjE.
     
 0.708
AMY54356.1
Hypothetical protein.
  
     0.699
AMY51564.1
Hypothetical protein.
  
     0.690
AMY51370.1
Hypothetical protein.
  
   
 0.680
AMY51481.1
Hypothetical protein.
  
     0.676
AMY54918.1
Hypothetical protein.
 
     0.668
AMY56159.1
Hypothetical protein.
  
   
 0.668
AMY55252.1
Hypothetical protein.
  
     0.612
AMY51922.1
Hypothetical protein.
  
     0.608
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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