Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53747.1Putative conjugal transfer protein. (394 aa)    
Predicted Functional Partners:
AMY53748.1
Hypothetical protein.
  
 
 0.996
AMY53749.1
Hypothetical protein.
  
 
 0.996
AMY53751.1
Hypothetical protein.
  
  
 0.900
AMY53750.1
Hypothetical protein.
     
 0.873
AMY53746.1
Hypothetical protein.
       0.821
AMY51928.1
Hypothetical protein.
  
  
 0.670
AMY53752.1
Hypothetical protein.
     
 0.609
AMY53745.1
Hypothetical protein.
       0.466
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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