Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
scoA_1Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A. (253 aa)    
Predicted Functional Partners:
scoB_1
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
 0.999
scoB_2
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
 0.999
ccl
(R)-citramalyl-CoA lyase.
  
 
 0.933
yngG
Hydroxymethylglutaryl-CoA lyase YngG; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.933
fadB_3
Fatty acid oxidation complex subunit alpha.
  
 
 0.933
fadJ
Fatty acid oxidation complex subunit alpha.
  
 
 0.933
hbd_1
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.912
fadB2_1
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.912
hbd_2
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.912
fadB2_2
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.912
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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