Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY53796.1NADH oxidase. (381 aa)    
Predicted Functional Partners:
sseB
Putative thiosulfate sulfurtransferase SseB.
       0.556
bbsG_3
(R)-benzylsuccinyl-CoA dehydrogenase.
  
 
 0.494
etfB
Electron transfer flavoprotein subunit beta.
  
 
 0.480
AMY53798.1
Putative oxidoreductase.
  
    0.441
rpsA_1
30S ribosomal protein S1.
   
  
 0.410
carD
RNA polymerase-binding transcription factor CarD.
   
    0.402
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.402
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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