Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gntR_1Putative D-xylose utilization operon transcriptional repressor. (218 aa)    
Predicted Functional Partners:
AMY53821.1
Hypothetical protein.
 
     0.905
rspR_9
HTH-type transcriptional repressor RspR.
  
     0.773
mce2R
HTH-type transcriptional regulator Mce2R.
  
     0.773
rspR_8
HTH-type transcriptional repressor RspR.
  
     0.772
rspR_1
HTH-type transcriptional repressor RspR.
  
     0.760
lutR_2
HTH-type transcriptional regulator LutR.
 
  
 0.736
lutR_4
HTH-type transcriptional regulator LutR.
 
  
 0.715
rspR_10
HTH-type transcriptional repressor RspR.
 
  
 0.703
lutR_5
HTH-type transcriptional regulator LutR.
 
  
 0.688
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.680
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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