Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53822.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
AMY53312.1
Hypothetical protein.
  
  
 0.830
efeN
Putative deferrochelatase/peroxidase EfeN; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
  
 0.794
ctaE
Putative cytochrome c oxidase subunit 3.
  
   0.735
ctaC
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.731
qcrC
Ubiquinol-cytochrome c reductase cytochrome c subunit.
   
 
 0.722
qcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
   
 
 0.718
ctaF
Cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
    
 
 0.698
AMY55957.1
Hypothetical protein.
    
   0.696
AMY52088.1
Hypothetical protein.
    
   0.689
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
   
 
 0.639
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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