Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53830.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
alc
Allantoicase; Belongs to the allantoicase family.
       0.770
proS_1
Proline--tRNA ligase.
  
    0.695
mtrR_2
HTH-type transcriptional regulator MtrR.
 
     0.638
AMY53325.1
Hypothetical protein.
  
     0.592
AMY54034.1
Hypothetical protein.
 
   0.536
AMY53832.1
Hypothetical protein.
       0.505
AMY52208.1
Hypothetical protein.
 
  
 0.502
AMY52125.1
Hypothetical protein.
 
     0.481
AMY52511.1
Hypothetical protein.
  
   
 0.477
tolB
Protein TolB.
  
 
 0.474
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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