Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
osmCPeroxiredoxin OsmC. (145 aa)    
Predicted Functional Partners:
dps
DNA protection during starvation protein; Belongs to the Dps family.
 
  
 0.568
AMY53858.1
Putative inactive lipase.
       0.547
AMY52186.1
Hypothetical protein.
     
 0.543
AMY54980.1
Hypothetical protein.
  
  
 0.492
yraA
Putative cysteine protease YraA.
 
  
 0.483
ftpA
Fine tangled pili major subunit; Belongs to the Dps family.
  
  
 0.464
otsA
Trehalose-phosphate synthase.
  
    0.459
cph2_4
Phytochrome-like protein cph2.
       0.459
todS
Sensor histidine kinase TodS.
  
  
 0.440
ybjG
Putative undecaprenyl-diphosphatase YbjG.
 
  
 0.440
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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