Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53866.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
mtcA2
Carbonic anhydrase 2.
       0.743
AMY53867.1
Hypothetical protein.
  
    0.735
mutY
A/G-specific adenine glycosylase.
       0.683
AMY51405.1
Hypothetical protein.
   
    0.679
npt
4'-phosphopantetheinyl transferase Npt; Belongs to the P-Pant transferase superfamily.
 
     0.472
AMY55922.1
Hypothetical protein.
  
     0.439
AMY53148.1
Putative MFS-type transporter.
  
     0.431
AMY55741.1
Alpha-(1->3)-arabinofuranosyltransferase.
  
     0.426
AMY52758.1
Hypothetical protein.
 
     0.409
AMY53374.1
Hypothetical protein.
  
    0.408
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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