Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kipIKinase A inhibitor. (200 aa)    
Predicted Functional Partners:
kipA_2
KipI antagonist.
 
 0.999
pxpA
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.998
kipA_1
KipI antagonist.
 
 
 0.981
znuB
High-affinity zinc uptake system membrane protein ZnuB.
       0.876
znuC_1
Zinc import ATP-binding protein ZnuC.
       0.876
ssaB
Manganese ABC transporter substrate-binding lipoprotein.
       0.804
accC_3
Biotin carboxylase.
  
   0.720
AMY51425.1
Hypothetical protein.
    
   0.697
AMY54483.1
Hypothetical protein.
  
  
 0.636
purR
HTH-type transcriptional repressor PurR.
       0.543
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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