Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cph2_5Phytochrome-like protein cph2. (757 aa)    
Predicted Functional Partners:
ydaM
Putative diguanylate cyclase YdaM.
 
 
 0.900
yeaP
Putative diguanylate cyclase YeaP.
 
 
 0.821
adrA_1
Putative diguanylate cyclase AdrA.
 
 
 0.821
cph2_7
Phytochrome-like protein cph2.
 
 
 0.821
bluB_1
5,6-dimethylbenzimidazole synthase.
       0.781
AMY53889.1
Hypothetical protein.
       0.773
ykuI
Putative EAL-domain containing protein YkuI.
 
 
0.702
cph2_1
Phytochrome-like protein cph2.
 
 
0.697
AMY55523.1
Hypothetical protein.
  
 
 0.656
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
0.566
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.