Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53895.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
kstR2_6
HTH-type transcriptional repressor KstR2.
       0.759
AMY53669.1
Hypothetical protein.
  
     0.524
AMY53896.1
Hypothetical protein.
       0.517
ligC
DNA ligase C1.
  
     0.503
cypE
Putative bifunctional P-450/NADPH-P450 reductase 2; Belongs to the cytochrome P450 family.
       0.500
AMY55703.1
Hypothetical protein.
  
     0.451
fpg2
Putative formamidopyrimidine-DNA glycosylase-like protein; Belongs to the FPG family.
  
     0.444
AMY54041.1
Hypothetical protein; Multifunctional non-homologous end joining protein LigD.
  
     0.425
recD_1
RecBCD enzyme subunit RecD.
  
     0.405
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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