Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53906.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
yfmO
Multidrug efflux protein YfmO.
 
   
 0.927
AMY51699.1
Universal stress protein.
 
   
 0.683
AMY53907.1
Putative membrane protein.
       0.536
AMY53100.1
Hypothetical protein.
     
 0.474
AMY53908.1
Hypothetical protein.
 
     0.462
AMY53903.1
Hypothetical protein.
     
 0.423
AMY53904.1
Hypothetical protein.
       0.415
cdoA
Cysteine dioxygenase.
  
     0.411
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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