Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53911.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
tsnR
23S rRNA (adenosine(1067)-2'-O)-methyltransferase.
       0.879
AMY55585.1
Hypothetical protein.
 
 
   0.798
AMY53913.1
Hypothetical protein.
       0.789
AMY55586.1
Hypothetical protein.
 
 
 
 0.786
AMY52125.1
Hypothetical protein.
  
   
 0.753
AMY53899.1
Hypothetical protein.
  
  
 0.734
AMY53909.1
Hypothetical protein.
       0.691
AMY54654.1
Hypothetical protein.
 
 
 0.670
AMY55584.1
Hypothetical protein.
  
     0.670
AMY53325.1
Hypothetical protein.
 
   
 0.647
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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