Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53913.1Hypothetical protein. (378 aa)    
Predicted Functional Partners:
AMY53911.1
Hypothetical protein.
       0.789
tsnR
23S rRNA (adenosine(1067)-2'-O)-methyltransferase.
       0.789
AMY55642.1
Alpha-(1->6)-mannopyranosyltransferase.
  
     0.693
pimE
Alpha-1,2-mannosyltransferase; Polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol pentamannoside mannosyltransferase.
  
     0.664
mptA
Alpha-(1->6)-mannopyranosyltransferase A.
  
     0.620
AMY55487.1
Hypothetical protein.
  
     0.604
AMY53909.1
Hypothetical protein.
       0.589
AMY53900.1
Hypothetical protein.
 
     0.554
AMY55841.1
Hypothetical protein.
  
     0.552
AMY54338.1
Hypothetical protein.
  
     0.550
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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