Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
uctC_2Acetyl-CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. (358 aa)    
Predicted Functional Partners:
purT
Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
       0.573
bbsG_2
(R)-benzylsuccinyl-CoA dehydrogenase.
 
 
 0.507
mmgC_1
Acyl-CoA dehydrogenase.
 
 
 0.505
acdA_5
Acyl-CoA dehydrogenase.
 
 
 0.477
AMY53492.1
Hypothetical protein.
 
 
 0.459
acdA_7
Acyl-CoA dehydrogenase.
 
 
 0.448
fac-dex
Fluoroacetate dehalogenase.
  
 
 0.442
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.437
AMY52362.1
Putative acyl-CoA dehydrogenase fadE25.
 
 
 0.434
bbsG_3
(R)-benzylsuccinyl-CoA dehydrogenase.
 
 
 0.426
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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