Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nikA_2Nickel-binding periplasmic protein. (536 aa)    
Predicted Functional Partners:
gsiC_2
Glutathione transport system permease protein GsiC.
 
 
 0.987
ddpC_3
Putative D,D-dipeptide transport system permease protein DdpC.
 
 
 0.985
AMY53962.1
Hypothetical protein.
 
  
 0.963
ntaA_3
Nitrilotriacetate monooxygenase component A.
 
   
 0.936
nikB_2
Nickel transport system permease protein NikB.
 
 
 0.933
ntaA_2
Nitrilotriacetate monooxygenase component A.
 
   
 0.928
gsiA_4
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 
 0.916
fgd_1
F420-dependent glucose-6-phosphate dehydrogenase.
 
   
 0.895
dppB_2
Dipeptide transport system permease protein DppB.
 
 
 0.811
nikB_1
Nickel transport system permease protein NikB.
 
 
 0.783
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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