Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53968.1Hypothetical protein. (604 aa)    
Predicted Functional Partners:
fliY
Cystine-binding periplasmic protein.
 
     0.622
cmtR
HTH-type transcriptional regulator CmtR.
   
    0.604
AMY53969.1
Hypothetical protein.
       0.548
AMY53962.1
Hypothetical protein.
 
     0.521
snaA
Pristinamycin IIA synthase subunit A.
 
     0.504
AMY53952.1
Hypothetical protein.
 
     0.498
moxC_1
Putative monooxygenase MoxC.
 
     0.475
limB_1
Limonene 1,2-monooxygenase.
 
     0.464
AMY54310.1
Hypothetical protein.
   
    0.463
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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