Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lapAminopeptidase. (488 aa)    
Predicted Functional Partners:
AMY53996.1
pH-sensitive adenylate cyclase.
   
  0.764
AMY53994.1
Hypothetical protein.
       0.695
natA_1
ABC transporter ATP-binding protein NatA.
       0.689
pnbA_1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
 0.558
pnbA_2
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
 0.558
AMY54627.1
Carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
  
 0.558
prtS
Protease PrtS; Extracellular zinc metalloprotease.
 
  
 0.526
clsB
Cardiolipin synthase B.
    
 0.466
hcnC_2
Hydrogen cyanide synthase subunit HcnC.
       0.459
AMY53991.1
Hypothetical protein.
       0.459
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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