Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54004.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
AMY54003.1
Hypothetical protein.
  
    0.769
AMY55307.1
Hypothetical protein.
  
     0.721
AMY54220.1
Hypothetical protein.
  
     0.676
def_1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.651
AMY51370.1
Hypothetical protein.
  
     0.641
sodC
Cu-Zn superoxide dismutase.
       0.629
cfp6
Low molecular weight protein antigen 6.
  
     0.622
AMY55620.1
Hypothetical protein.
  
     0.620
AMY55828.1
Hypothetical protein.
  
     0.615
AMY53184.1
Hypothetical protein.
  
     0.612
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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