Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sodCCu-Zn superoxide dismutase. (240 aa)    
Predicted Functional Partners:
sodA
Mn superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.993
qcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 
 0.901
AMY52488.1
Hypothetical protein.
   
 0.884
copZ
Copper chaperone CopZ.
   
 0.884
qcrA
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
   
 
 0.880
katG
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.876
katG2
Catalase-peroxidase 2; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.876
lpqE
Putative lipoprotein LpqE.
    
   0.866
AMY55957.1
Hypothetical protein.
    
   0.866
AMY55804.1
Alkyl hydroperoxide reductase subunit C.
   
 
 0.864
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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