Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54020.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
hmp_1
Flavohemoprotein; Belongs to the globin family.
  
  
 0.815
ftsH_2
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
       0.656
xylA
Xylene monooxygenase electron transfer component.
  
  
 0.646
carAd
Ferredoxin--NAD(P)(+) reductase CarAd; Belongs to the globin family.
  
  
 0.646
AMY54519.1
Hypothetical protein.
  
     0.637
AMY54019.1
Hypothetical protein.
       0.575
AMY52748.1
Hypothetical protein.
  
     0.528
AMY54017.1
Hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.527
AMY54021.1
Hypothetical protein.
       0.512
AMY51430.1
Hypothetical protein.
  
     0.470
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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