Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54039.1Hypothetical protein. (347 aa)    
Predicted Functional Partners:
adhT_2
Alcohol dehydrogenase.
 
   
 0.970
AMY54038.1
Hypothetical protein.
 
    0.953
algB
Alginate biosynthesis transcriptional regulatory protein AlgB.
 
     0.885
AMY53447.1
Hypothetical protein.
 
     0.802
AMY54036.1
Hypothetical protein.
 
     0.756
mmoX
Methane monooxygenase component A alpha chain.
 
     0.754
mmoY
Methane monooxygenase component A beta chain.
 
     0.739
mmoC
Methane monooxygenase component C.
 
     0.682
acoR_2
Acetoin dehydrogenase operon transcriptional activator AcoR.
 
     0.677
AMY54041.1
Hypothetical protein; Multifunctional non-homologous end joining protein LigD.
       0.406
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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