Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ansP2L-asparagine permease 2. (477 aa)    
Predicted Functional Partners:
aspA
Aspartate ammonia-lyase.
     
 0.923
ansA
L-asparaginase.
     
 0.858
AMY54047.1
Hypothetical protein.
       0.686
bcp_1
Putative peroxiredoxin bcp.
      
 0.618
argG_1
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
     
 0.560
lutR_4
HTH-type transcriptional regulator LutR.
     
 0.559
AMY54048.1
Hypothetical protein.
       0.437
fruA
PTS system fructose-specific EIIABC component.
   
  
 0.401
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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