Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY54064.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
menG_3
Demethylmenaquinone methyltransferase.
     
 0.802
lcfB_9
Long-chain-fatty-acid--CoA ligase.
 
  
 0.603
htpX_1
Protease HtpX.
       0.565
mce2R
HTH-type transcriptional regulator Mce2R.
  
    0.556
yfiY_5
Putative siderophore-binding lipoprotein YfiY.
       0.555
AMY54858.1
Hypothetical protein.
  
   
 0.547
AMY53516.1
Putative HTH-type transcriptional regulator.
 
    0.541
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
       0.525
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
       0.525
AMY54069.1
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
       0.525
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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