Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY54078.1Hypothetical protein. (333 aa)    
Predicted Functional Partners:
crtB
All-trans-phytoene synthase.
     
 0.636
crtI_1
Phytoene desaturase (lycopene-forming).
   
  
 0.620
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
      
 0.618
maoII
Copper methylamine oxidase.
     
 0.536
prr_2
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.529
soxA
Sarcosine oxidase subunit alpha.
  
 0.457
fadH
2,4-dienoyl-CoA reductase [NADPH].
   
 0.428
thcD_1
Rhodocoxin reductase.
   
 0.413
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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