Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54080.1Putative HTH-type transcriptional regulator. (491 aa)    
Predicted Functional Partners:
fgd1_4
F420-dependent glucose-6-phosphate dehydrogenase.
       0.732
aceA
Isocitrate lyase.
 
   
 0.688
AMY54781.1
Hypothetical protein.
  
  
 0.637
crp
cAMP receptor protein.
   
  
 0.619
AMY55949.1
Hypothetical protein.
   
 
 0.608
AMY54081.1
Hypothetical protein.
       0.566
glcB_2
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
     
 0.502
gltA2
Citrate synthase 1; Belongs to the citrate synthase family.
  
  
 0.436
mutA_1
Putative methylmalonyl-CoA mutase small subunit.
 
   
 0.426
nrdR
Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
   
  
 0.406
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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