Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54088.1Putative pyridoxine/pyridoxamine 5'-phosphate oxidase. (156 aa)    
Predicted Functional Partners:
AMY55285.1
Putative nitroreductase.
  
     0.614
AMY54087.1
Hypothetical protein.
       0.592
AMY52320.1
Putative nitroreductase.
  
     0.589
fgd1_2
F420-dependent glucose-6-phosphate dehydrogenase.
  
     0.529
AMY53205.1
Hypothetical protein.
 
     0.498
AMY52230.1
Universal stress protein.
  
    0.486
fgd1_4
F420-dependent glucose-6-phosphate dehydrogenase.
  
     0.483
fgd1_3
F420-dependent glucose-6-phosphate dehydrogenase.
  
     0.477
AMY52318.1
Hypothetical protein.
 
     0.438
AMY52275.1
Hypothetical protein.
 
     0.416
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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