Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY54094.1Putative HTH-type transcriptional regulator. (155 aa)    
Predicted Functional Partners:
hbhA
Heparin-binding hemagglutinin.
       0.879
AMY54096.1
Hypothetical protein.
       0.784
AMY54093.1
Hypothetical protein.
       0.779
AMY55233.1
Hypothetical protein.
  
   
 0.764
AMY51902.1
Hypothetical protein.
  
   
 0.753
AMY53724.1
Putative ATPase.
  
     0.711
AMY54113.1
Hypothetical protein.
  
     0.695
AMY54142.1
Hypothetical protein.
  
     0.687
ubiB_2
Putative protein kinase UbiB.
  
     0.674
arsA
Arsenical pump-driving ATPase.
  
     0.605
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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