Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hbhAHeparin-binding hemagglutinin. (264 aa)    
Predicted Functional Partners:
AMY54094.1
Putative HTH-type transcriptional regulator.
       0.879
AMY54096.1
Hypothetical protein.
 
     0.824
AMY54093.1
Hypothetical protein.
       0.779
AMY54104.1
Hypothetical protein.
  
     0.761
AMY53923.1
Hypothetical protein.
  
    0.760
AMY54354.1
Hypothetical protein.
  
     0.747
AMY53152.1
Hypothetical protein.
  
     0.743
AMY51363.1
Hypothetical protein.
  
     0.741
AMY56152.1
Hypothetical protein.
  
     0.741
AMY55828.1
Hypothetical protein.
  
     0.740
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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