Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54102.1Hypothetical protein. (188 aa)    
Predicted Functional Partners:
AMY54101.1
Hypothetical protein.
 
     0.870
ppe2
Putative PPE family protein PPE2.
  
     0.716
AMY55585.1
Hypothetical protein.
  
     0.707
AMY52125.1
Hypothetical protein.
  
     0.705
AMY55586.1
Hypothetical protein.
 
     0.678
AMY53245.1
Hypothetical protein.
  
     0.653
AMY52427.1
Hypothetical protein.
  
     0.648
AMY55584.1
Hypothetical protein.
  
     0.646
alpha-LP
Alpha-lytic protease.
  
     0.609
AMY53911.1
Hypothetical protein.
  
     0.559
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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