Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54104.1Hypothetical protein. (163 aa)    
Predicted Functional Partners:
AMY51549.1
Hypothetical protein.
  
     0.770
AMY53346.1
Putative membrane protein.
  
     0.763
hbhA
Heparin-binding hemagglutinin.
  
     0.761
AMY52782.1
Hypothetical protein.
  
     0.757
AMY53923.1
Hypothetical protein.
  
     0.754
AMY54105.1
Hypothetical protein.
 
   
0.750
AMY53152.1
Hypothetical protein.
  
     0.741
AMY56159.1
Hypothetical protein.
  
    0.741
AMY54103.1
Hypothetical protein.
       0.735
AMY53141.1
Hypothetical protein.
 
     0.733
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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