Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54107.1Putative Rieske 2Fe-2S iron-sulfur protein. (516 aa)    
Predicted Functional Partners:
AMY53979.1
Hypothetical protein.
 
  
 0.873
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.766
AMY55016.1
Hypothetical protein.
 
    0.691
cysG
Siroheme synthase.
  
  
 0.684
nasF
Uroporphyrinogen-III C-methyltransferase.
  
  
 0.665
AMY53756.1
Hypothetical protein.
  
     0.656
AMY54390.1
Hypothetical protein.
  
  
 0.653
murG_2
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
  
 0.630
AMY54133.1
Hypothetical protein.
  
     0.629
lprQ
L,D-transpeptidase 5.
 
   
 0.625
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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