Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lprQL,D-transpeptidase 5. (412 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.717
AMY54105.1
Hypothetical protein.
       0.633
AMY54107.1
Putative Rieske 2Fe-2S iron-sulfur protein.
 
   
 0.625
AMY56054.1
Hypothetical protein.
  
     0.590
AMY54900.1
Hypothetical protein.
 
     0.578
cdoA
Cysteine dioxygenase.
  
     0.532
asnB
Putative asparagine synthetase.
  
  
 0.502
AMY53746.1
Hypothetical protein.
 
    0.476
AMY53749.1
Hypothetical protein.
  
     0.445
AMY52127.1
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.439
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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