Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmpCMembrane lipoprotein TmpC. (363 aa)    
Predicted Functional Partners:
rbsA_4
Ribose import ATP-binding protein RbsA.
 
 
 0.997
AMY54118.1
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.994
AMY54117.1
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
uacT_2
Uric acid transporter UacT.
     
 0.565
deoA
Thymidine phosphorylase.
 
   
 0.526
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
   
 0.514
lcfB_5
Long-chain-fatty-acid--CoA ligase.
       0.497
rbsA_5
Ribose import ATP-binding protein RbsA; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.477
mshA_3
D-inositol 3-phosphate glycosyltransferase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.
       0.454
AMY54113.1
Hypothetical protein.
       0.454
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.