Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AMY54118.1Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. (422 aa)    
Predicted Functional Partners:
rbsA_4
Ribose import ATP-binding protein RbsA.
 
 0.998
AMY54117.1
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.997
tmpC
Membrane lipoprotein TmpC.
 
 
 0.994
rbsA_5
Ribose import ATP-binding protein RbsA; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.671
rbsA_3
Ribose import ATP-binding protein RbsA.
 
   
 0.564
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.531
lcfB_5
Long-chain-fatty-acid--CoA ligase.
       0.530
xylG
Xylose import ATP-binding protein XylG.
 
   
 0.521
uacT_2
Uric acid transporter UacT.
       0.521
rbsA_1
Ribose import ATP-binding protein RbsA.
 
   
 0.472
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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