Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54126.1Putative inactive lipase. (400 aa)    
Predicted Functional Partners:
AMY52638.1
Hypothetical protein.
 
     0.766
AMY52017.1
Putative inactive lipase.
  
     0.759
AMY54124.1
Putative inactive lipase.
 
    
0.684
AMY54125.1
Hypothetical protein.
       0.668
AMY54064.1
Hypothetical protein.
 
     0.511
qacA_4
Antiseptic resistance protein.
  
    0.472
papA2
Trehalose-2-sulfate acyltransferase papA2.
       0.470
AMY54127.1
Hypothetical protein.
       0.469
AMY54128.1
Hypothetical protein.
       0.469
fbpB_4
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
 
    0.458
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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