Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY54137.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
AMY54136.1
Hypothetical protein.
  
    0.934
proC_2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.852
AMY54135.1
Hypothetical protein.
 
     0.817
gppA_2
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
  
    0.775
AMY54139.1
Putative DNA-binding proteinA.
       0.730
AMY53900.1
Hypothetical protein.
  
   
 0.654
AMY55079.1
Hypothetical protein.
  
   
 0.647
AMY54133.1
Hypothetical protein.
       0.609
AMY55828.1
Hypothetical protein.
  
     0.571
AMY51410.1
Hypothetical protein.
  
 
 0.568
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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