Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY54139.1Putative DNA-binding proteinA. (78 aa)    
Predicted Functional Partners:
proC_2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.745
AMY54137.1
Hypothetical protein.
       0.730
AMY54136.1
Hypothetical protein.
  
    0.576
AMY54140.1
Hypothetical protein.
       0.573
gppA_2
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
       0.543
AMY54135.1
Hypothetical protein.
       0.543
AMY54133.1
Hypothetical protein.
 
     0.536
AMY55144.1
Hypothetical protein.
  
     0.466
AMY55083.1
Hypothetical protein.
  
     0.441
AMY55750.1
Hypothetical protein.
  
     0.440
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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